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发布者:中国科学院生物物理研究所蛋白质科学研究平台 时间:2016年09月04日

[1] Qing Yao, Qiuhe Lu, Xiaobo Wan, Feng Song, Yue Xu, Mo Hu, Alla Zamyatina, Xiaoyun Liu, Niu Huang, Ping Zhu, Feng Shao(2014).A structural mechanism for bacterial autotransporter glycosylation by a dodecameric heptosyltransferase family.Elifedoi: 10.7554/eLife.03714

[2] Buqing Ye, Chong Li, Zhao Yang, Yanying Wang, Junfeng Hao, Li Wang, Yi Li, Ying Du, Lu Hao, Benyu Liu, Shuo Wang, Pengyan Xia, Guanling Huang, Lei Sun, Yong Tian, and Zusen Fan(2014).Cytosolic carboxypeptidase CCP6 is required for megakaryopoiesis by modulating Mad2 polyglutamylation.Journal of Experimental MedicineEpub ahead of print

[3] Xiaoyun Pang, Jun Fan, Yan Zhang, Kai Zhang, Bingquan Gao, Jun Ma, Jian Li, Yuchen Deng, Qiangjun Zhou, Edward H. Egelman, Victor W. Hsu, Fei Sun(2014).A PH Domain in ACAP1 Possesses Key Features of the BAR Domain in Promoting Membrane Curvature.Developmental Cell31(1):73-86

[4] Zhou H, Zhang B, Zheng J, Yu M, Zhou T, Zhao K, Jia Y, Gao X, Chen C, Wei T(2014).The inhibition of migration and invasion of cancer cells by graphene via the impairment of mitochondrial respiration.Biomaterials35(5):1597-607

[5] Bing T, Yu H, Li Y, Sun L, Tan J, Geng Y, Qiao W(2014).Characterization of a full-length infectious clone of bovine foamy virus 3026.Virol Sin29(2):94-102

[6] Cao C, Wang X, Cai Y, Sun L, Tian L, Wu H, He X, Lei H, Liu W, Chen G, Zhu R, Pan Y.(2014).Targeted in vivo imaging of microscopic tumors with ferritin-based nanoprobes across biological barriers.Adv Mater26(16):2566-71

[7] Zhu H, Zhuang J, Feng H, Liang R, Wang J, Xie L, Zhu P.(2014).Cryo-EM structure of isomeric molluscan hemocyanin triggered by viral infection.PLoS One9(6):e98766

[8] Jinben Wang, Hui Wang, Pei Zhang, Xuefeng Shi, Danfeng Yu, Haike Yan and Gang Ji(2014).Environmental responsive polymeric materials: effect of topological structure on self-assembly.Soft Matterpublished online 24 Jun

[9] Cheng L, Huang X, Li X, Xiong W, Sun W, Yang C, Zhang K, Wang Y, Liu H, Huang X, Ji G, Sun F, Zheng C, Zhu P.(2014).Cryo-EM structures of two bovine adenovirus type 3 intermediates.Virology450-451:174-81

[10] Gong M, Zhu H, Zhou J, Yang C, Feng J, Huang X, Ji G, Xu H, Zhu P.(2014).Cryo-electron microscopy study of insect cell-expressed enterovirus 71 and coxsackievirus a16 virus-like particles provides a structural basis for vaccine development.J Virol88(11):6444-52

[11] Zhu B, Yang C, Liu H, Cheng L, Song F, Zeng S, Huang X, Ji G, Zhu P.(2014).Identification of the active sites in the methyltransferases of a transcribing dsRNA virus.J Mol Biol426(11):2167-74

[12] Xu Y, Li H, Jin YH, Fan J, Sun F(2014).Dimerization Interface of 3-Hydroxyacyl-CoA Dehydrogenase Tunes the Formation of Its Catalytic Intermediate.PLoS One9(4)

[13] Feng Song, Ping Chen, Dapeng Sun, Mingzhu Wang, Liping Dong, Dan Liang, Rui-Ming Xu, Ping Zhu, Guohong Li(2014).Cryo-EM Study of the Chromatin Fiber Reveals a Double Helix Twisted by Tetranucleosomal Units.Science Vol. 344 no. 6182 pp. 376-380

[14] Liang M, Fan K, Zhou M, Duan D, Zheng J, Yang D, Feng J, Yan X.(2014).H-ferritin-nanocaged doxorubicin nanoparticles specifically target and kill tumors with a single-dose injection.Proc Natl Acad SciEpub ahead of print

[15] Xiao-Ming Zhou, Aiman Entwistle, Dr. Hong Zhang, Dr. Antony P. Jackson, Thomas O. Mason, Dr. Ulyana Shimanovich, Dr. Tuomas P. J. Knowles, Prof. Andrew T. Smith, Dr. Elizabeth. Sawyer and Prof. Sarah Perrett(2014).Self-Assembly of Amyloid Fibrils That Display Active Enzymes.ChemCatChem 6(7):1961–1968

[16] Liu S, Tian LF, Liu YP, An XM, Tang Q, Yan XX, Liang DC.(2014).Structural basis for DNA recognition and nuclease processing by the Mre11 homologue SbcD in double-strand breaks repair.Acta Crystallogr D Biol Crystallogr70(Pt 2):299-309

[17] Xia P, Wang S, Huang G, Du Y, Zhu P, Li M, Fan Z(2014).RNF2 is recruited by WASH to ubiquitinate AMBRA1 leading to downregulation of autophagy.Cell ResEpub ahead of print

[18] Ye B, Dai Z, Liu B, Wang R, Li C, Huang G, Wang S, Xia P, Yang X, Kuwahara K, Sakaguchi N, Fan Z.(2014).Pcid2 inactivates developmental genes in human and mouse embryonic stem cells to sustain their pluripotency by modulation of Eid1 stability.Stem Cells32(3):623-35

[19] Liu D, Sheng C, Gao S, Jiang W, Li J, Yao C, Chen H, Wu J, Chen S, Huang W.(2014).eEF1Bγ is a positive regulator of NF-кB signaling pathway.Biochem Biophys Res Commun446(2):523-8

[20] Jia LP, Liang AP.(2014).An apposition-like compound eye with a layered rhabdom in the small diving beetle Agabus japonicus (Coleoptera, Dytiscidae).J MorpholEpub ahead of print

[21] Zhu S, Gao B.(2014).Nematode-derived drosomycin-type antifungal peptides provide evidence for plant-to-ecdysozoan horizontal transfer of a disease resistance gene.Nat Commun5:3154

[22] Dai W, Song T, Wang X, Jin X, Deng L, Wu A, Jiang T.(2014).Improvement in low-homology template-based modeling by employing a model evaluation method with focus on topology.PLoS One9(2):e89935

[23] Deng L, Wu A, Dai W, Song T, Cui Y, Jiang T.(2014).Exploring protein domain organization by recognition of secondary structure packing interfaces.BioinformaticsEpub ahead of print

[24] Ye B, Li C, Yang Z, Wang Y, Hao J, Wang L, Li Y, Du Y, Hao L, Liu B, Wang S, Xia P, Huang G, Sun L, Tian Y and Fan Z. Cytosolic carboxypeptidase CCP6 is required for megakaryopoiesis by modulating Mad2 polyglutamylation. J Exp Med. 211,12(2439-54) 2014   (IF=13.912)  署名

[25] Dong W, Wei X, Zhang F, Hao J, Huang F, Zhang C, Liang W. A dual character of flavonoids in influenza A virus replication and spread through modulating cell-autonomous immunity by MAPK signaling pathways. Sci Rep. 4:7237(1-12), 2014  (IF= 5.078)  署名

[26] Pengyan Xia, Shuo Wang, Guanling Huang, Pingping Zhu, Man Li, Buqing Ye, Ying Du, and Zusen Fan. WASH is required for the differentiation commitment of hematopoietic stem cells in a c-Myc-dependent manner. J Exp Med. 211,9(2119-2134) 2014   (IF=13.912)  致谢

[27] Teng Zhou, Bo Zhang, PengWei, Yipeng Du, Hejiang Zhou, Meifang Yu, Liang Yan, Wendi Zhang, Guangjun Nie, Chunying Chen, Yaping Tu, Taotao Wei. Energy metabolism analysis reveals the mechanism of inhibition of breast cancer cell metastasis by PEG-modified graphene oxide nanosheets. Biomaterials.20141-14)  (IF=8.557)   致谢

[28] Chong Li, Zhao Yang, Ying Du, Haidong Tang, Jun Chen, Deqing Hu, and Zusen Fan. BCMab1, A Monoclonal Antibody against Aberrantly Glycosylated Integrin a3b1, Has Potent Antitumor Activity of Bladder Cancer In Vivo. Clin Cancer Res. 20(4001-4013),2014   (IF=8.722)  致谢

[29] Xiaoxiao Zhu, Yajie Xu, Shanshan Yu, Lu Lu, Mingqin Ding, Jing Cheng, Guoxu Song, Xing Gao, Liangming Yao, Dongdong Fan, Shu Meng, Xuewen Zhang, Shengdi Hu & Yong Tian. An Efficient Genotyping Method for Genome-modified Animals and Human Cells Generated with CRISPR/Cas9 System. SCIENTIFIC REPORTS.2014, 9. DOI: 10.1038/srep06420 IF= 5.078 致谢

[30] Liu P. B., Ye Z. L., Cai T. X., Dai S.J*., and Yang F. Q*., The research advances in lipoproteomics. Prog. Biochem. Biophys. 2014, 41(12):1197~1206.

[31] Chen X. L., Wei S.S., Ma Y., Lu J., Niu G., Xue Y. H., Chen X.Y.*, and Yang F. Q.*, Quantitative proteomics analysis identifies mitochondria as therapeutic target of multidrug-resistance in ovarian cancer, Theranostics, 2014,4(12),1164-1175.

[32] Yin Y, Cai X, Chen X, Liang H, Zhang Y, Li J, Wang Z, Chen X, Zhang W, Yokoyama S, Wang C, Li L, Li L, Hou D, Dong L, Xu T, Hiroi T, Yang F, Ji H, Zhang J, Zen K, Zhang CY., Tumor-secreted miR-214 induces regulatory T cells: a major link between immune evasion and tumor growth, Cell Res. 2014,24(10): 1164-80.

[33] Chen Y, Ding Y, Yang L, Yu J, Liu G, Wang X, et al. Integrated omics study delineates the dynamics of lipid droplets in Rhodococcus opacus PD630. Nucleic acids research. 2014;42:1052-64.

[34] Li XW, Rees JS, Xue P, Zhang H, Hamaia SW, Sanderson B, et al. New Insights into the DT40 B-Cell Receptor Cluster using a Proteomic Proximity Labeling Assay. The Journal of biological chemistry. 2014.

[35] Liu J, Li Y, Wei L, Yang X, Xie Z, Jiang T, et al. Screening and identification of potential biomarkers and establishment of the diagnostic serum proteomic model for the Traditional Chinese Medicine Syndromes of tuberculosis. Journal of ethnopharmacology. 2014;155:1322-31.

[36] Lu Q, Ding S, Reiland S, Rodiger A, Roschitzki B, Xue P, et al. Identification and characterization of chloroplast casein kinase II from Oryza sativa (rice). Journal of experimental botany. 2014.

[37] Ma X, Zhu Y, Li C, Xue P, Zhao Y, Chen S, et al. Characterisation of Caenorhabditis elegans sperm transcriptome and proteome. BMC genomics. 2014;15:168.

[38] Shan L, Li X, Liu L, Ding X, Wang Q, Zheng Y, Duan Y, Xuan C, Wang Y, Yang F, Shang Y and Shi L .,GATA3 cooperates with PARP1 to regulate CCND1 transcription through modulating histone H1 incorporation, Oncogene, 2014, 33, 3205–3216.

[39] Sun S, Zhao F, Wang Q, Zhong Y, Cai T, Wu P, et al. Analysis of age and gender associated N-glycoproteome in human whole saliva. Clinical proteomics. 2014;11:25.

[40] Tian M, Chen X, Xiong Q, Xiong J, Xiao C, Ge F, et al. Phosphoproteomic analysis of protein phosphorylation networks in Tetrahymena thermophila, a model single-celled organism. Molecular & cellular proteomics : MCP. 2014;13:503-19.

[41] Wu W, Tian W, Hu Z, Chen G, Huang L, Li W, et al. ULK1 translocates to mitochondria and phosphorylates FUNDC1 to regulate mitophagy. EMBO reports. 2014;15:566-75.

[42] Yang S, Wang X, Cui L, Ding X, Niu L, Yang F, et al. Compact conformations of human protein disulfide isomerase. PloS one. 2014;9:e103472.

[43] Ye B, Li C, Yang Z, Wang Y, Hao J, Wang L, et al. Cytosolic carboxypeptidase CCP6 is required for megakaryopoiesis by modulating Mad2 polyglutamylation. The Journal of experimental medicine. 2014.

[44] Zeng Q, Zhang P, Wu Z, Xue P, Lu D, Ye Z, et al. Quantitative proteomics reveals ER-alpha involvement in CD146-induced epithelial-mesenchymal transition in breast cancer cells. Journal of proteomics. 2014;103C:153-69.

[45] Zhang Y, Chang FM, Huang J, Junco JJ, Maffi SK, Pridgen HI, Catano G, Dang H, Ding X, Yang F, Kim DJ, Slaga TJ, He R, Wei SJ., DSSylation, a novel protein modification targets proteins induced by oxidative stress, and facilitates their degradation in cells, Protein Cell. 2014, 5(2):124-40.

[46] Zhang Y, Hong Q, Huang Z, Xue P, Lv Y, Fu B, et al. ALDR Enhanced Endothelial Injury in Hyperuricemia Screened using SILAC. Cellular physiology and biochemistry, 2014;33:479-90.

[47] Junjie Zhang , Fei Guo , Lei Wang , Wei Zhao , Da Zhang , Heying Yang , Jiekai Yu , Lili Niu , Fuquan Yang , etal. Identification of Apolipoprotein C-I as a Potential Wilms Tumor Marker after Excluding Inflammatory Factors. International Journal of Molecular Sciences, 2014, 15, 16186-16195.

[48] Cheng L, Huang X, Li X, Xiong W, Sun W, Yang C, et al. Cryo-EM structures of two bovine adenovirus type 3 intermediates. Virology. 2014;450-451:174-81.

[49] Cytosolic carboxypeptidase CCP6 is required for megakaryopoiesis by modulating Mad2 polyglutamylation. 2014. Ye B, Li C, Yang Z, Wang Y, Hao J, Wang L, Li Y, Du Y, Hao L, Liu B, Wang S, Xia P, Huang G, Sun L, Tian Y, Fan Z. J Exp Med.

[50] γ-glutamyl transpeptidase 1 specifically suppresses green-light avoidance via GABAA receptors in Drosophila.2014.Liu J., Gong G., Liu L. JOURNAL OF NEUROCHEMISTRY

[51] Zehuan Huang, Liulin Yang, Yiliu Liu, Zhiqiang Wang, Oren A. Scherman, and Xi Zhang*. Supramolecular Polymerization Promoted and Controlled through Self-sorting**. Angew. Chem. Int. Ed. 2014, 53, 1 – 6

[52] Qingqing Wang a,b, Lijing Sun a, Shaoyang Ji a, Dawei Zhao a,b, Jiaxin Liu c, Zhiguo Sua,d,, Tao Hua, Reversible protection of Cys-93(β) by PEG alters the structural and functional properties of the PEGylated hemoglobin. Biochimica et Biophysica Acta 1844 (2014) 1201–1207

[53] Chongyun Cheng,a,b Jianhua Gu,c Jing Su,b Wei Ding,d Jie Yin,b Wenguang Liang,b Xiaoxia Yu,b Jun Ma,a Peng George Wang,e Zhicheng Xiaoa* and Zhi-Jie Liub*. Crystallization, preliminary X-ray crystallographic and cryo-electron microscopy analysis of a bifunctional enzyme fucokinase/L-fucose-1-P-guanylyltransferase from Bacteroides fragilis. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS 2014,70( ):1206-1210

[54] Ren Ren1, 2, Haiping Liu1, 5, Wenjia Wang3, Mingzhu Wang1, Na Yang1, Yu-hui Dong3, Weimin Gong1, Ruth Lehmann4, Rui-Ming Xu1. Structure and domain organization of Drosophila Tudor. Cell Research (2014) :1-4.

[55]  Li J, Guan X, Shaw N, Chen W, Dong Y, Xu X, Li X, Rao Z.Homotypic dimerization of a maltose kinase for molecular scaffolding.Sci Rep. 2014 Sep 23;4:6418. doi: 10.1038/srep06418.

[56] F JunpingJ DaohuaZ YanL JianfengZ Xuejun Cai.Crystal structure of lipid phosphatase Escherichia coli phosphatidelglycerophosphate phosphatase B. PNAS.2014, 111(21):7636-7640

[57] Minghao Dang, Xiangxi Wang, Quan Wang, Yaxin Wang,Jianping Lin, Yuna Sun, Xuemei Li, Liguo Zhang, Zhiyong Lou, Junzhi Wang, Zihe RaoMolecular mechanism of SCARB2-mediated attachment and uncoating of EV71. Protein Cell 2014, 5(9): 692–703

[58]  Minghao Dang, Xiangxi Wang, Quan Wang, Yaxin Wang,Jianping Lin, Yuna Sun, Xuemei Li, Liguo Zhang, Zhiyong Lou, Junzhi Wang, Zihe RaoMolecular mechanism of SCARB2-mediated attachment and uncoating of EV71. Protein Cell 2014, 5(9): 692–703

[59] Luo CP, Liu XH, Zhou HF, Wang XY, Chen ZY, Identification of four NRPS gene clusters in Bacillus subtilis 916 for four families of lipopeptides biosynthesis and evaluation of their intricate functions to the typical phenotypic features, Appl. Environ. Microb. 2014, Oct

[60] Feng H, Ding J, Zhu D, Liu X, Xu X, Zhang Y Zang S,. Wang DC and Liu W, Structural and Mechanistic Insights into NDM-1 Catalyzed Hydrolysis of Cephalosporins, J. Am. Chem. Soc. 2014, Oct

[61] L Zhu, M Xu, MX Yang, YL Yang, Y Li, JW Deng, LH Ruan, JH Liu, SD Du, XH Liu, W Feng, K Fushimi, EH Bigio, M Mesulam, W Chen, JY Wu, An ALS-mutant TDP-43 neurotoxic peptide adopts an anti-parallel structure and induces TDP-43 redistribution, Hum. Mol. Genet., 2014, xxx():

[62] Jiang D, Zhao Y, Fan J, Liu X, Wu Y, Feng W, Zhang XC. Atomic resolution structure of the E. coli YajR transporter YAM domain, Biochem. and Biophy. Res. Comm., 2014, 450(2): 929-35

[63]  Ren Ren, Haiping Liu, Wenjia Wang, Mingzhu Wang, Na Yang, Yu-hui Dong, Weimin Gong, Ruth Lehmann and Rui-Ming Xu. Structure and domain organization of Drosophila Tudor. Cell Research (2014) 24:1146–1149. 

[64] Yang X, Xu M, Wang Y, Xia P, Wang S, Ye B, Tong L, Jiang T, Fan Z. Molecular mechanism for self-protection against the type VI secretion system in Vibrio cholerae. Acta Crystallogr D Biol Crystallogr. 2014,70:1094-103. 

[65] Liu X, Yin Y, Wu J, Liu Z. Structure and mechanism of an intramembrane liponucleotide synthetase central for phospholipid biosynthesis. Nat Commun. 2014,5:4244.(属PNAS及其以上的文章)

[66] Lusheng Gu, Yi Sheng, Yan Chen, Hao Chang, Yongdeng Zhang, Pingping Lv, Wei ji* and Tao Xu *.  High-density 3D single molecular analysis based on compressed sensing. Biophysical Journal 2014, 106,1-7

[67]  Bei Liu, Wanjuan Feng, Tao Xu, Wei Ji.A machine learning-based method to detect fluorescent spots and an accelerated, parallel implementation of this method  Chin. Sci. Bull. 2014, 59(28): 3573–3578.