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2015年署名致谢文章

发布者:中国科学院生物物理研究所蛋白质科学研究平台 时间:2016年09月04日

[1] Wang XY, Wang DB, Zhang ZP, Bi LJ, Zhang JB, Ding W, Zhang XE.(2015).A S-Layer Protein of Bacillus anthracis as a Building Block for Functional Protein Arrays by In Vitro Self-Assembly.Smalldoi: 10.1002/smll.201501413

[2] Wang CY, Zhang QF, Gao YZ, Zhou XP, Ji G, Huang XJ, Hong J, Zhang CX(2015). Insight into the three-dimensional structure of maize chlorotic mottle virus revealed by Cryo-EM single particle analysis.Virology485:171-8

[3] Han R, Wang L, Liu Z, Sun F, Zhang F.(2015).A novel fully automatic scheme for fiducial marker-based alignment in electron tomography.Journal of Structural Biologydoi: 10.1016

[4] Liu B, Xue Y, Zhao W, Chen Y, Fan C, Gu L, Zhang Y, Zhang X, Sun L, Huang X, Ding W, Sun F, Ji W, Xu T(2015).Three-dimensional super-resolution protein localization correlated with vitrified cellular context.Sci Rep5:13017

[5] Xiaomin Li , Hongli Feng , Jianguo Zhang, Lei Sun, Ping Zhu(2015).Analysis of chromatin fibers in Hela cells with electron tomography.Biophysics Reports11):51-60

[6] Fang J, Liu Y, Wei Y, Deng W, Yu Z, Huang L, Teng Y, Yao T, You Q, Ruan H, Chen P, Xu RM, Li G(2015).Structural transitions of centromeric chromatin regulate the cell cycle-dependent recruitment of CENP-N.Genes Dev29(10):1058-73

[7] Peng S, Gao J, Liu Y, Guo DS(2015).Facile fabrication of cross-linked vesicle via "surface clicking" of calixarene-based supra-amphiphiles.Chem Commun (Camb)51(92):16557-60

[8] Ru H, Chambers MG, Fu TM, Tong AB, Liao M, Wu H(2015).Molecular Mechanism of V(D)J Recombination from Synaptic RAG1-RAG2 Complex Structures.Cell163(5):1138-52

[9] Cao X, Jin X, Zhang X, Li Y, Wang C, Wang X, Hong J, Wang X, Li D, Zhang Y(2015).Morphogenesis of Endoplasmic Reticulum Membrane-Invaginated Vesicles during Beet Black Scorch Virus Infection: Role of Auxiliary Replication Protein and New Implications of Three-Dimensional Architecture.J Virol89(12):6184-95

[10] Li Z, Qi X, Ren X, Cui L, Wang X*, Zhu P*(2015).Molecular characteristics and evolutionary analysis of a very virulent infectious bursal disease virus.Sci China Life Sci588: 731738

[11] Congping Shang ,Zhihui Liu,Zijun Chen, Yingchao Shi, Qian Wang, Su Liu, Dapeng Li, Peng Cao(2015).parvalbumin-positive excitatory visual pathway to trigger fear responses in mice.Science26;348(6242):1472-7,2015

[12] Pengyan Xia, Shuo Wang, Buqing Ye, Ying Du, Guanling Huang, Pingping Zhu & Zusen Fan(2015).Sox2 functions as a sequence-specific DNA sensor in neutrophils to initiate innate immunity against microbial infection.Nature immunology16(4):366-75,2015

[13] Zhouliang Yu, Xiang Zhou, Wenjing Wang, Wenqiang Deng, Junnan Fang, Hao Hu,Zichen Wang, Shangze Li, Lei Cui, Jing Shen, Linhui Zhai, Shengyi Peng, Jiemin Wong, Shuo Dong, Zengqiang Yuan, Guangshuo Ou, Xiaodong Zhang, Ping Xu, Jizhong Lou, Na Yang, Ping(2015).Dynamic Phosphorylation of CENP-A at Ser68 Orchestrates Its Cell-Cycle-Dependent Deposition at CentromeresStem.Developmental Cell32(1):68-81, 2015

[14] Xiaocui Fang, Tao Yang, Luoyang Wang, Jibing Yu, Xiuli Wei, Yinjian Zhou, Chen Wang, Wei Liang(2015).Nano-cage-mediated refolding of insulin by PEG-PE micelle.Biomaterials77: 139-148

[15] Ling Li, Fangfang Zhao, Baojing Zhao, Jin Zhang, Chao Li, Renzhong Qiao(2015).Chitosan Grafted with Phosphorylcholine and Macrocyclic Polyamine as an Effective Gene Delivery Vector: Preparation, Characterization and In Vitro Transfection.Macromolecular Bioscience15: 912-926

[16] Jingyang Wang, Hui Zhou, Hua Lu, Ting Du, Yuanming Luo , Iain B.H. Wilson , Cheng Jin(2015).Kexin-like endoprotease KexB is required for N-glycan processing morphogenesis and virulence in Aspergillus fumigatus.Fungal Genet Biol76:57–69

[17] Zhou L, Yu H, Ai G, Zhang B, Hu S, Dong X(2015).Transcriptomic and physiological insights into the robustness of UASB granule-prevalent long filamentous cells of Methanosaeta harundinacea.Appl Environ Microbiol81: 831-839

[18] Li Dong, Xiaoyan Yang, Wen Gu, Kangfeng Zhao, Huizheng Ge, et al.(2015).Connexin 43 mediates PFOS-induced apoptosis in astrocytes.Chemosphere132: 8-16

[19] Jing Wang, Wen Zhu, Lixin Liu, Yongming Chen, Chun Wang(2015).Synthesis and Cellular Internalization of Spindle Hematite/Polymer Hybrid Nanoparticles.ACS Applied Materials & Interfaces7: 5454-61

[20] Qiu XF, Zhu QW, Sun JY(2015).Quantitative analysis of vesicle recycling at the calyx of Held synapse.PNAS112(15):4779-84

[21] Jianwen Deng, Mengxue Yang, Yanbo Chen, Xiaoping Chen, Jianghong Liu, Shufeng Sun, Haipeng Cheng, Yang Li, Eileen H. Bigio, Marsel Mesulam, Qi Xu, Sidan Du, Kazuo Fushimi, Li Zhu , Jane Y. Wu (2015).FUS Interacts with HSP60 to Promote Mitochondrial Damage.PLoS Genet11(9):e1005357

[22] Hongrong Liu, Lingpeng Cheng(2015).Cryo-EM shows the polymerase structures and a nonspooled genome within a dsRNA virus.Science349(6254):1347-1350

[23] Yue Yuan, Lin Wang, Wei Du, Zhanling Ding, Jia Zhang, Tao Han, Linna An, Huafeng Zhang, Gaolin Liang(2015).Intracellular Self-Assembly of Taxol Nanoparticles for Overcoming Multidrug Resistance.Angewandte Chemie International Edition5427DOI: 10.1002/anie.201504329

[24] Zhao YG, Sun L, Miao G, Ji C, Zhao H, Sun H, Miao L, Yoshii SR, Mizushima N, Wang X, Zhang H.(2015).The autophagy gene Wdr45/Wipi4 regulates learning and memory function and axonal homeostasis.Autophagy11(6):881-90

[25] Sheng Shen, Xing Jia, Haitao Guo and Hongyu Deng(2015).Gammaherpesvirus Tegument Protein ORF33 Is Associated with Intranuclear Capsids at an Early Stage of the Tegumentation Process.Journal of Virology8910):5288-5297

[26] Pingping Zhu,1, 2, Yanying Wang,2, Ying Du,2, Lei He,3, Guanling Huang,2, 4, Geng Zhang,2, Xinlong Yan2, & Zusen Fan(2015).C8orf4 negatively regulates self-renewal of liver cancer stem cells via suppression of NOTCH2 signalling.Nature Communications 6:7122

[27] Zhang W, Li J, Suzuki K, Qu J, Wang P, Zhou J, Liu X, Ren R, Xu X, Ocampo A, Yuan T, Yang J, Li Y, Shi L, Guan D, Pan H, Duan S, Ding Z, Li M, Yi F6, Bai R, Wang Y, Chen C, Yang F, Li X, Wang Z, Aizawa E, Goebl A, Soligalla RD, Reddy P, Esteban CR, Tang F(2015).A Werner syndrome stem cell model unveils heterochromatin alterations as a driver of human aging.Science348(6239):1160-3

[28] Shen S, Jia X, Guo H, Deng H.(2015).Tegument protein ORF33 of a gammaherpesvirus is associated with intranuclear capsids at an early stage of tegumentation process.Journal of Virology89(10):5288-97

[29] Shenghai Chang, Dapeng Sun, Huanhuan Liang, Jia Wang, Jun Li, Lu Guo, Xiangli Wang, Chengcheng Guan, Bhargavi M. Boruah, Lingmin Yuan, Feng Feng, Mingrui Yang, Lulan Wang, Yao Wang, Justyna Wojdyla, Lanjuan Li, Jiawei Wang, Meitian Wang, Genhong Cheng, Ho(2015).Cryo-EM Structure of Influenza Virus RNA Polymerase Complex at 4.3 Å Resolution.Molecular Cell57(5):925-35

[30] Siying Qin, Hang Yin, Celi Yang, Yunfeng Dou, Zhongmin Liu, Peng Zhang, He Yu, Yulong Huang, Jing Feng, Junfeng Hao, Jia Hao, Lizong Deng, Xiyun Yan, Xiaoli Dong, Zhongxian Zhao, Taijiao Jiang, Hong-Wei Wang, Shu-Jin Luo, and Can Xie. A magnetic protein biocompass. Nature Materials. 14,(217-229)2015  (IF=36.503 )  署名

[31] Bo Zhang, Jing Wang, Zhen Huang, Peng Wei, Ying Liu, Junfeng Hao, Lijing Zhao, Fenglin Zhang, Yaping Tu and Taotao Wei. Aberrantly upregulated TRAP1 is required for tumorigenesis of breast cancer. Oncotarget.10,(44495-44508)2015  (IF=6.63 )   署名

[32] Teng Zhou, Meifang Yu, Bo Zhang; Liming Wang, Xiaochun Wu, Hejiang Zhou, Yipeng Du, Junfeng Hao, Yaping Tu, Chunying Chen and Taotao Wei. Inhibition of Cancer Cell Migration by Gold Nanorods: Molecular Mechanisms and Implications for Cancer Therapy.Adv. Funct. Mater. DOI:10.1002/adfm.201401642   (IF= 10.875)   署名

[33] Cheng D.W., Zheng L., Hou J.J., Wang J.F., Yang F.Q.* and Xu T.*, A new dimethyl labeling-based SID-MRM-MS method and its application to three proteases involved in insulin maturation, Biophysics Reports, 2015, 1(2):71-80.

[34] Yuan LL, Chen X, Zong Q, Zhao T, Wang JL, Zheng Y, Zhang M, Wang Z, Brownlie JC, Yang F.Q*, Wang Y F*.,Quantitative Proteomic Analyses of Molecular Mechanisms Associated with Cytoplasmic Incompatibility in Drosophila melanogaster Induced by Wolbachia., J Proteome Res. 2015,14(9):3835-47.

[35] Shu Q, Cai T, Chen X, Zhu HH, Xue P, Zhu N, Xie Z, Wei S, Zhang Q, Niu L, Gao WQ*, Yang F.Q*., Proteomic Comparison and MRM-Based Comparative Analysis of Metabolites Reveal Metabolic Shift in Human Prostate Cancer Cell Lines, J Proteome Res. 2015,14(8): 3390-402.

[36] Chen X, Wei S, Ji Y, Guo X, Yang F.Q*., Quantitative proteomics using SILAC: Principles, applications, and developments, Proteomics, 2015, 15(18): 3175-92.

[37] Bai C, Guo P, Zhao Q, Lv Z, Zhang S, Gao F, Gao L, Wang Y, Tian Z, Wang J, Yang F, Liu C, Protomer roles in Chloroplast Chaperonin Assembly and Function, Mol Plant, 2015, S1674-2052(15)00264-6.

[38] Na H, Zhang P, Chen Y, Zhu X, Liu Y, Liu Y, Xie K, Xu N, Yang F, Yu Y, Cichello S, Mak HY, Wang MC, Zhang H, Liu P., Identification of lipid droplet structure-like/resident proteins in Caenorhabditis elegans, Biochim Biophys Acta. 2015, S0167-4889(15)00174-3.

[39] Zhang W, Li J, Suzuki K, Qu J, Wang P, Zhou J, Liu X, Ren R, Xu X, Ocampo A, Yuan T, Yang J, Li Y, Shi L, Guan D, Pan H, Duan S, Ding Z, Li M, Yi F, Bai R, Wang Y, Chen C, Yang F, Li X, Wang Z, Aizawa E, Goebl A, Soligalla RD, Reddy P, Esteban CR, Tang F, Liu GH, Belmonte JC., Aging stem cells. A Werner syndrome stem cell model unveils heterochromatin alterations as a driver of human aging, Science. 2015,348(6239):1160-3.

[40] Yu J, Zhang S, Cui L, Wang W, Na H, Zhu X, Li L, Xu G, Yang F, Christian M, Liu P., Lipid droplet remodeling and interaction with mitochondria in mouse brown adipose tissue during cold treatment, Biochim Biophys Acta. 2015 May;1853(5):918-28.

[41] Zhu Z, Ding Y, Gong Z, Yang L, Zhang S, Zhang C, Lin X, Shen H, Zou H, Xie Z, Yang F, Zhao X, Liu P, Zhao ZK., Dynamics of the lipid droplet proteome of the Oleaginous yeast rhodosporidium toruloides, Eukaryot Cell. 2015 Mar;14(3): 252-64.

[42] Cai T. X., Shu Q. B., Hou J. J., Liu P. B., Niu Lili., Guo X. J., and Yang F. Q*., Rapid Profiling and Relative Quantitation of Phosphoinositides by Multiple Precursor Ion Scanning Based on Phosphate Methylation and Isotopic Labeling,. Anal. Chem. 2015, 87(1): 513-21.

[43] Du Y. P., Cai T. X., Li T. T., Xue P., Zhou T., He X. L., Wei P. , Liu P. S., Yang F.Q*. Wei T. T*., Elevation of protein lysine malonylation and its identification in liver tissues of db/db mice, Mol Cell Proteomics, 2015,14(1):227-36.

[44] Xue, P.; Zhou, Y.; Ding, X.; Wang, J.; Xie, Z. S.; Yang, F. Q., Comparison of Hydrazide Chemistry and Lectin Affinity Based Enrichment Methods for N-glycoproteomics. Progress in Biochemistry and Biophysics 2015, 42, (4), 356-364.

[45] Yang, G.; Xu, Z.; Lu, W.; Li, X.; Sun, C.; Guo, J.; Xue, P.(co-correspondence); Guan, F., Quantitative Analysis of Differential Proteome Expression in Bladder Cancer vs. Normal Bladder Cells Using SILAC Method. PLoS One 2015, 10, (7), e0134727.

[46] Lu, W.; Yang, G. L.; Xue, P.; Liu, C. M.; Guan, F., Quantitative Analysis of Integrin alpha 6 in Bladder Cancer Cell Lines. Progress in Biochemistry and Biophysics 2015, 42, (5), 468-475.

[47] Lu, Q.; Ding, S.; Reiland, S.; Rodiger, A.; Roschitzki, B.; Xue, P.; Gruissem, W.; Lu, C.; Baginsky, S., Identification and characterization of chloroplast casein kinase II from Oryza sativa (rice). J Exp Bot 2015, 66, (1), 175-87.

[48] Ultrafast Photoinduced Electron Transfer in Green Fluorescent Protein Bearing a Genetically Encoded Electron Acceptor. J. Am. Chem. Soc. 2015, 137, 7270−7273.

[49] Biochemical and structural characterization of a novel ubiquitin-conjugating enzyme E2 from Agrocybe aegeria reveals Ube2w family-specific properties. Scientific Reports, 2015, 5:16056.

[50] Translational Study of Alzheimer’s Disease (AD) Biomarkers from Brain Tissues in APP/PS1 Mice and Serum of AD Patients. Journal of Alzheimer’s Disease, 45 (2015) 269–282.

[51] Duanfang Cao,  Mingzhu Wang,  Xiayang Qiu,  etal.  Structural  basis for allosteric, substratedependent stimulation of SIRT1 activity  by resveratrol.  GENES & DEVELOPMENT 2015, 29:13161325.

[52] Translational Study of Alzheimer’s Disease (AD) Biomarkers from Brain Tissues in A PP/PS1 Mice and Serum of AD Patients. Journal of Alzheimer’s Disease 45,2015 269–282.

[53] Quantitative analysis of an engineered CO2-fixing Escherichia coli reveals great potential of heterotrophic CO2 fixation.2015. Gong F., Liu G., Zhai X, Zhou J., Cai Z. and Li Y. Biotechnology for Biofuels.

[54] Acta Crystallographica Section D: Biological Crystallography, Volume 71, Part 4, p779-789. 2015

[55] Zhiming Wang, Zhu Qiao, Sheng Ye and Rongguang ZhangActa Cryst. (2015). D71, 779789

[56] Na Yanga,b,1,2, Zhenyu Yua,1, Menglong Hua,1,3, Mingzhu Wanga, Ruth Lehmannc,d,2, and Rui-Ming Xua, Structure of Drosophila Oskar reveals a novel RNA binding protein. PNAS | September 15, 2015 | vol. 112 | no. 37 | 11541–11546

[57] Shuai Yuan1,2, Lei Cao1,3, Hui Ling4, Minghao Dang1, Yao Sun1, Xuyuan Zhang1, Yutao Chen1, Liguo Zhang1,Dan Su3, Xiangxi Wang1&, Zihe Rao1&. TIM-1 acts a dual-attachment receptor for Ebolavirus by interacting directly with viral GP and the PS on the viral envelope. Protein Cell 2015, 6(11):814–824 DOI 10.1007/s13238-015-0220-y

[58] Huihui Chong, Zonglin Qiu, Yang Su, Lingli Yang and Yuxian He. Design of a highly potent HIV-1 fusion inhibitor targeting the gp41 pocket. AIDS 2015, 29:13–21

[59] Ni X#, Ru H#, Ma F#, Zhao L#, Shaw N, Feng Y, Ding W, Gong W, Wang Q, Ouyang S*, Cheng G*, Liu ZJ*. New insights into the structural basis of DNA recognition by HINa and HINb domain of IFI16. J Mol Cell Biol. 2015.(#: co-first author*: co-corresponding author) IF: 6.771

[60]  Z WangZ QiaoS YeR Zhang,Structure of a double-domain phosphagen kinase reveals an asymmetric arrangement of the tandem domains. Acta Crystallographica, 2015, 71(Pt4):779-789

[61] Molecular basis for the inhibition of β-hydroxyacyl-ACP dehydaztase HasAB complex from Mycobacterium tuberculosis by flavonoid inhibitors. Protein Cell 2015, 6(7): 504–517

[62] Wu Liu · Yutao Chen · Xi Jiang · Ming Xia · Yang Yang · Ming Tan ·Xuemei Li · Zihe Rao .A Unique Human Norovirus Lineage with a Distinct HBGA Binding Interface. PLoS Pathogens 07/2015; 11(7):e1005025. 

[63] Unusual biosynthesis and structure of locillomycins from Bacillus subtilis 916, Luo CP, Liu XH, Zhou X, Guo JY, John T, Wang XY, Zhou HF, Li XQ and Chen ZY, , Appl. Environ. Microb. 2015,81(19): 6601-9

[64] Peptidyl-prolyl isomerization targets rice Aux/IAAs for proteasomal degradation during auxin signaling, Jing H, Yang X, Zhang J, Liu X, Zheng H, Dong G, Nian J, Feng J, Xia B, Qian Q, Li J, Zuo J.  Nat. Commun., 2015 (6):7395

[65]  Cao D, Wang M, Qiu X, Liu D, Jiang H, Yang N, Xu RM. Structural basis for allosteric, substrate-dependent stimulation of SIRT1 activity by resveratrol. Genes Dev. 2015, 29(12):1316-25.

[66] Li Y, Wan Y, Liu P, Zhao J, Lu G, Qi J, Wang Q, Lu X, Wu Y, Liu W, Zhang B, Yuen KY, Perlman S, Gao GF, Yan J. A humanized neutralizing antibody against MERS-CoV targeting the receptor-binding domain of the spike protein. Cell Res. 2015,25(11):1237-49.

[67] Wu H, Gong W, Yao X, Wang J, Perrett S, Feng Y. Evolutionarily conserved binding of translationally controlled tumor protein to eukaryotic elongation factor 1B. J Biol Chem. 2015, 290(14):8694-710. 

[68] Yuan S, Cao L, Ling H, Dang M, Sun Y, Zhang X, Chen Y, Zhang L, Su D, Wang X, Rao Z. TIM-1 acts a dual-attachment receptor for Ebolavirus by interacting directly with viral GP and the PS on the viral envelope. PROTEIN & CELL 2015,6(11):814-824.

[69] Zhang Zhenfeng, Gong Yong, Chen Yuanyuan, Li Hongbin, Huang Li. Insights into the interaction between Cren7 and DNA: the role of loop β3-β4. Extremophiles. 2015, 19:395-4066.

[70]  Li W, Gu S, Fleming J, Bi L.Crystal structure of FadD32, an enzyme essential for mycolic acid biosynthesis in mycobacteria. Sci Rep. 2015, 5:15493.

[71] Wei Y, Han C, Wang Y, Wu B, Su T, Liu Y, He R, Ribosylation triggering Alzheimer's disease-like Tau hyperphosphorylation via activation of CaMKII. Aging Cell. 2015,14(5):754-63.

[72] Zhang XL, Li DF, Fleming J, Wang LW, Zhou Y, Wang DC, Zhang XE, Bi LJ. Core component EccB1 of the Mycobacterium tuberculosis type VII secretion system is a periplasmic ATPase.FASEB J. 2015,29(12):4804-14.

[73] 王娅、王翔、刘志杰、李雪梅、朱美玉、向桂林,高通量蛋白质自动化筛选平台——助力生命奥秘探索 开辟整体问题研究,中国科研整体化信息蓝皮书2013 北京:科学出版社,2013 ISBN 978-7-03-032831-1

[74] 翟永功、李雪梅、王娅,生物资源库的建设、开放与共享——重要生理功能和重大疾病相关蛋白质研究公共资源库简介,生物学通报,201550卷第7期,p1-4

[75] Bei Liu, Yanhong Xue, Wei Zhao, Yan Chen, Chunyan Fan, Lusheng Gu, Yongdeng Zhang, Xiang Zhang, Lei Sun, Xiaojun Huang, Wei Ding, Fei Sun,Wei Ji* and Tao Xu*. Three-dimensional super-resolution protein localization correlated with vitrified cellular context Scientific Reports, 2015, 5(2):475a

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